Scaffold Ga0236341_1005337

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1005337
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5443
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003080	Metagenome / Metatranscriptome	508	Y
F009462	Metagenome / Metatranscriptome	317	Y
F018716	Metagenome / Metatranscriptome	233	Y
F063276	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_100533710	F063276	N/A	MSLRENLDFYIAMIVGVTGIIFAIYWNYTHPHVVVKYDCSIAEISPDYPIAVKEGCRKLRARNI
Ga0236341_100533713	F003080	AGGA	MTTAKDLTDQLINRAKNLKEFVVERDYDLIPPGIIKFNIQHTVGQPARIFVPALTQAEAESMVDDWFGEEV
Ga0236341_10053377	F018716	GAG	MNLKCYVNAMNHNNNTVVVTWDNQSGFWWNETCAIVLEIFGLPGDRYESKPEHDYMSFTFKNFKDADLCRVLLSERL
Ga0236341_10053379	F009462	AGGA	MELHESVRDSYKEMVIKEHEGFRLILKKHEVLSPKGLFSIDMVQESLKDGDVVDSQTYNFFMTKEECQALAYGLTA