NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1002527

Scaffold Ga0236341_1002527


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1002527 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9211
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F011754Metagenome / Metatranscriptome287Y
F021237Metagenome / Metatranscriptome219Y
F100256Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_100252717F001008GGAGMSKEKHMPKLWIDGETADRITLTTLKDYRKYLKSELTKWKKNPKTEDNPDGYWLHPEDVSGNIRRIEALNLIIRDYSISGDE
Ga0236341_100252720F021237GAGMRYYDYEWDLEPNRIILDPELDIDKLGWKGGDLFKVVNKNGQAMLVKVDPLVKFIEEGVRHGQMG
Ga0236341_10025278F011754N/AMKIGFSLGRCVRDIVNGDVDVDDVAFIIAATAIRDSEEHLQAVISEYMNRGDYLLGYDEDECQRVAKELWDSHRVLQPRLEGIHRHRQPDNAVWVDMFPTSLTENDSVRNAWEQYRFMLHMVENVDNEAIEVFKK
Ga0236341_10025279F100256N/AMIRVSTKDPIFNQAWCNAHRALPVWELERPRQYGQRWREVYRCRVDPTDSKLGETYYIFDHDEDYTWFMLKWT

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