Scaffold Ga0236341_1002527

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1002527
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9211
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F011754	Metagenome / Metatranscriptome	287	Y
F021237	Metagenome / Metatranscriptome	219	Y
F100256	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_100252717	F001008	GGAG	MSKEKHMPKLWIDGETADRITLTTLKDYRKYLKSELTKWKKNPKTEDNPDGYWLHPEDVSGNIRRIEALNLIIRDYSISGDE
Ga0236341_100252720	F021237	GAG	MRYYDYEWDLEPNRIILDPELDIDKLGWKGGDLFKVVNKNGQAMLVKVDPLVKFIEEGVRHGQMG
Ga0236341_10025278	F011754	N/A	MKIGFSLGRCVRDIVNGDVDVDDVAFIIAATAIRDSEEHLQAVISEYMNRGDYLLGYDEDECQRVAKELWDSHRVLQPRLEGIHRHRQPDNAVWVDMFPTSLTENDSVRNAWEQYRFMLHMVENVDNEAIEVFKK
Ga0236341_10025279	F100256	N/A	MIRVSTKDPIFNQAWCNAHRALPVWELERPRQYGQRWREVYRCRVDPTDSKLGETYYIFDHDEDYTWFMLKWT