Scaffold Ga0236341_1001734

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1001734
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11942
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006979	Metagenome / Metatranscriptome	360	Y
F008806	Metagenome	327	Y
F009327	Metagenome / Metatranscriptome	319	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_100173415	F008806	GGAG	MTFLLSEDEALRNLLKDMVVTDQKSNATGVATRAVKVYFGQPDQELRDQTYPYITIDMIDISEDTMRAMRGKVAPSYISDPSNMTPSLDFDPTVHGWEIDYPIPVNIDYQVTTYARQPRQDREILAQLLYTKIPLRFAVLETNDNTVRRLDVLDISKRDVTEQGKRLFVNALTVRVSSEIAPSTFHVMYKALQVSVTGTNGGLVRGRTNPTFTPIDSFTHTAQ
Ga0236341_10017344	F009327	GGA	MRGSKVQGRFKIDFEHLSINEGIVDELRDPVGSIVNWYLWDAQFFADHPEEVVDDIYDVSSQITNYGRRWKAPFEVPVIMAQQLRGTNVMNERGFYTVDTLRLVIAVEDVTRLLPALLGSPNVHIKDRIVFQGEVFVPTRVLPRGRYANNYSVVTLDCNQLNSEELVNDPQFQAYVDTATPPQGSISPGGIGNSVDGGSPTTVTFDSMLNSGQI
Ga0236341_10017348	F006979	AGGCGG	MAKKIKAAGEIHTIKKNKKGDIIVDHPGNKGPWDKINLTKKAGAKNIQQGVKAVQKYHRTTGK