NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1001572

Scaffold Ga0236341_1001572


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1001572 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12670
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (94.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F010760Metagenome / Metatranscriptome299Y
F026201Metagenome / Metatranscriptome198Y
F090382Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_100157217F026201AGGAGMQNAKQYITETADGYDLYIALDNETCAGVAVESISMFIAKDEDESGDGDLAVTWNMDGLVNDETARTAGMLLLRNIHSDDEVTAVMGQFYWEGAFTERLNEILADKGFTACNVHTSEWGMQDEGRASYDAYDLADEVRSIMQTTTA
Ga0236341_100157221F010760AGGAGVDISNIVKVYNGKCGCMCGCNGKYSYTQDGAENFGPGYDVTDSINERSVKIIAKKVLNNPNANRVESTEYVFVEDRVANKIQVVYFKK
Ga0236341_100157223F000652AGGAGMKTVMITTILRQELEVPDSWEREDVYDFLGEYQSFRTAFQGVSNEDQTARIVDLGVLEEEVTEMDGEEFDK
Ga0236341_10015726F090382GAGGMIRIDPTLNEFETIIVAEHLKNKGVTSYTLARGNDCIWAYYGRINEYYIFSKGQLVDIQI

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