Scaffold Ga0236341_1001572

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1001572
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12670
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (94.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F010760	Metagenome / Metatranscriptome	299	Y
F026201	Metagenome / Metatranscriptome	198	Y
F090382	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_100157217	F026201	AGGAG	MQNAKQYITETADGYDLYIALDNETCAGVAVESISMFIAKDEDESGDGDLAVTWNMDGLVNDETARTAGMLLLRNIHSDDEVTAVMGQFYWEGAFTERLNEILADKGFTACNVHTSEWGMQDEGRASYDAYDLADEVRSIMQTTTA
Ga0236341_100157221	F010760	AGGAG	VDISNIVKVYNGKCGCMCGCNGKYSYTQDGAENFGPGYDVTDSINERSVKIIAKKVLNNPNANRVESTEYVFVEDRVANKIQVVYFKK
Ga0236341_100157223	F000652	AGGAG	MKTVMITTILRQELEVPDSWEREDVYDFLGEYQSFRTAFQGVSNEDQTARIVDLGVLEEEVTEMDGEEFDK
Ga0236341_10015726	F090382	GAGG	MIRIDPTLNEFETIIVAEHLKNKGVTSYTLARGNDCIWAYYGRINEYYIFSKGQLVDIQI