NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1001456

Scaffold Ga0236341_1001456


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1001456 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13234
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008023Metagenome / Metatranscriptome340Y
F012098Metagenome / Metatranscriptome283Y
F016389Metagenome / Metatranscriptome247Y
F030064Metagenome186Y
F084140Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_100145611F084140N/AMEHSMYTIGKLITEWQKSPNSDQLLDEVVLGAEAFHAIAKELKRRA
Ga0236341_100145612F012098AGGAMPKVHNIGPKHFVQLIDFPVIWGKKFVVRGWTQEIEEPFRSSTPYLVRLPKHKAIAFGKWTGFKTEEEALNSALETREVTYDDFTEEAGWTPAPDSGGEESSEDFYSRLDSMDGAQYVHDWKTYYRMAKESE
Ga0236341_100145615F016389N/AMPIIRKFAIQGHAIPQVAHSPRGPFPPEILEQPRMEYETGHSDSLHEGLDDVRFFKCRDCDELLLQEHLNTHDCEED
Ga0236341_100145618F030064AGGAGVTTFFTTLGIVTGALISLGVLLNPLRKKVKRWANWMERFMRDWEGEEAEPGRDRVPGVMERLNKLDGELSNNGGSTTKDKVDRLYTNQTQVIETQNKLVEAFVEMGERLISIENCLTDNKTPAKN
Ga0236341_10014564F008023AGGAGVANTPTSPLDATGRAAEQAAKKNAKAIQDRKDEISIAAQVEAESLEKDVFDPKKPDAPLVLDEIESVGVTTANDSVVIRTITDIEEMTFGVGNHYTFRAGVKYKVSRDLANYLEQLGYIWRPN
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