Scaffold Ga0236341_1001217

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1001217
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14737
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008023	Metagenome / Metatranscriptome	340	Y
F012098	Metagenome / Metatranscriptome	283	Y
F016389	Metagenome / Metatranscriptome	247	Y
F030064	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_100121711	F012098	N/A	MPKIHNIGPKHFVQVTNFPYDWGNKVITRGWTQEISEPFRTSNPLIVRLPKYKALVFGKWTGYKNEEEALSIALEKREVTYDDFTEEAGWIPAPDQDREESSEDFDSRPGSMDGALYVHYWKTHNLMAEISE
Ga0236341_100121719	F008023	AGGAG	VANSQTSPLDATGLAAEKAAKKNQEALRKRQDEISIAAHIEAESLEKDVFDPKKPDAPLVLDEIEEVGVTTANDTVIIRTITDIEEMTYGVGNHYSFKAGVKYRVPSGLADYLEQLGYVWRPN
Ga0236341_10012174	F030064	AGGAG	VTTLFTTIGIVAGALISLGVLLNPLRKKVKRWASWMERFMRDWEGEEAEPGRDRVPGVMERLNKLDGELSNNGGSTTKDKVDKLYKNQGILMEAFVEMGERLISIENCLTNSKTEPLN
Ga0236341_10012178	F016389	AGG	MPLIRKFAIQGHAVPSVVHSPRGPFPPEVLAQPRMEMDDQHSDSLHVGLDNVRFFKCRACEEILLETELTNHDCEEINGY