NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1000953

Scaffold Ga0236341_1000953


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1000953 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16948
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005167Metagenome / Metatranscriptome410Y
F009741Metagenome / Metatranscriptome313Y
F014843Metagenome / Metatranscriptome259Y
F019092Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_100095318F009741N/AMPQTFDGNYDYTKPWRAPVQPDQVAKRWQYQGPWSTNMERLTSQALMIMSIPGADIQAMVRPPLPQIRLFPDRFGYGERSQPGIEDVVTIDRQYHEPRISWFSGGPAGFGGTARNDLGGI
Ga0236341_100095322F005167AGGTGGMAVNSSRSMNNSLNEGATDGKYRKARPDTEVIAGLGDEATLDNRQSLNPFYGYGFITSEYPNKVNPGK
Ga0236341_100095326F019092AGGAGMSNVPILGQKPQAANEPMFRLLYCLVCQTLEELPPYDGAPEQDHLLAIACETHVFPSGEPHKGKLFVLPLRVWAKPESKKEVIRQIKGGGSAGLDEIDDTFYDSRSTFMEGAMECYRKHNKPKDGCVEWHDKGKLLIPNTIKERKAEGMGRYQDEAGPKTYLCDFCPVAVAVAQRKRKLLGME
Ga0236341_100095329F014843N/AMTSRNEADAKQWLQSHGIINYDDLIDSSFALEGEDLKKRQFTISRGRAPIEMYVDADPTMCAWVFEDQHIPAILFSHPGFAAVENRPDAPKKVRRWSDIEESINRVNIARSENAQRPKEAELWSD
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