 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022591 Open in IMG/M |
| Scaffold ID | Ga0236341_1000514 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Laval University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23968 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (88.46%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | SAS2a, Kuujjuarapick, Canada | |||||||
| Coordinates | Lat. (o) | 55.1491 | Long. (o) | -77.4866 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010759 | Metagenome | 299 | Y |
| F017591 | Metagenome | 239 | Y |
| F027087 | Metagenome / Metatranscriptome | 195 | Y |
| F086513 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0236341_100051412 | F086513 | AGGA | MTTKKPTRATTPTPWADRAAPTDTTAVAESEPLYDLEGLMTDFPTARDLEQFVFDQTGHVLNLKGRSNKFKYQTAMDVLNGRAPEDYMKGNENPYLDKNDLIPVDTFRTLPPRPSEVVGVPAVSSFISKTFPHPDPEWAATGQKCEVVFRKYVNNVITYEVIGPISTRPVGTRVNKFGKEVPEKYTWVDPRTGEQIIRDSAGRLTPRGSVLRAQLQKAKINNKTYWELWVDREFVMGDASNLNDNPWGVN |
| Ga0236341_100051413 | F027087 | N/A | MDQEQIKLISETRILQKVNRMHREAFGDKYPGQVEHCLRLIMERLQAGLDKRDGVDPGRPETWRMSTLEIHDLADAAHRLNEIRRGF |
| Ga0236341_100051420 | F010759 | AGG | MSAKYYMNTNDEFSNYQDKSYLDSSEEPTFNADSFRQDTGGLVTKDNGIADRLLQNDRLYNTLKGDWKREGWNGSRNVKITTGREGGKFFINREQFNLPQIAEHCAEYRKRAEAGYIDPLAPIMPDGKLGYKWMELPDVIAIDISNDYFGGMPWAALKNDRTLKAQFYRVVEREYNAFVCYPGGKLPIPIEVPYPNRVGSEKFFKGHTA |
| Ga0236341_100051421 | F017591 | AGG | MSNLLPVSTGDDLVQFVQQFTGSSDNNEIQQCVYLTELMMRNIELPALRTNPWVTIGTANSYGQVPIPADMNRPILFFNQGSGGTGPNPNGAGPWIVYDRIGDRDIITQTLNQNLFLAPYNTPQVYRGKFSEVGQYYEFIPILSAGAQINMYYYTTWPLLFTTDSNNNQVQTNQVLSSWPEGYVYGTLHNYYYKRKMMEDADKWLAKYNLAYDTVEDQNNKGKWSGGHNKLSSVFQPRKDRRFGTR |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |