Scaffold Ga0236341

Basic Information
Taxon OID	3300022591 Open in IMG/M
Scaffold ID	Ga0236341_1000502 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Laval University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022591 Open in IMG/M

Scaffold ID

Ga0236341_1000502 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Laval University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24143
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (63.41%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

24143

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (63.41%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location Name	SAS2a, Kuujjuarapick, Canada
Coordinates	Lat. (^o)	55.1491	Long. (^o)	-77.4866	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

SAS2a, Kuujjuarapick, Canada

Coordinates

Lat. (^o)

55.1491

Long. (^o)

-77.4866

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F009462	Metagenome / Metatranscriptome	317	Y
F015338	Metagenome / Metatranscriptome	255	Y
F026556	Metagenome / Metatranscriptome	197	Y
F033308	Metagenome	177	Y
F063276	Metagenome	129	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_100050218	F033308	AGGA	MTTEKQVFDELFYRMKTTDLNKFEIKREVGPNWLPNGTVPFDISATKGVATFTVWAESIQDAEDQVSKFLEQDEDE
Ga0236341_100050219	F002977	GAG	MRVIQIPAEGIMQTNDWGDSKVYRVTCSCGASDHDHHVWVEADNHEVSVTIYTTIKSNWWSKTRWHAMWTLLTKGYIDTESTVIMRKQQAINYAHTLLSAVEDVETFRKQKDDNRKTSI
Ga0236341_100050221	F063276	AGGA	MQDSTIRQNLDFYSVLILGIAGLIFAIYWNYTHPHVVVKYDCSIAEISPDYPIAVKEGCRKLRAENILQKPK
Ga0236341_100050222	F070810	N/A	METVEAVYEIKVDWKLGQDSSKWWDKVCIDIMEVFGLPGDRYTSHPHTDCMLFRFNSHKDYQLCKILLSDKI
Ga0236341_100050224	F026556	GGAGG	MSTLTGSLIKLTFGIAFIIIALALGPILGIWALNTLFPALHISLTWETWAAFNILFGGSLVKFGASK
Ga0236341_100050226	F009462	GAG	MHWENTEHLKQLKEMKMELHESVRDTYKEMVIKEHEGYRLTLKKHEVLSPKGLFSIDMVQESLKDGDVVESQTYNFFMDKAELQALAHGLTL
Ga0236341_10005026	F015338	AGAAG	MTLKAGKANPLNYFNLRRVDFACPHFRYITINKYNPTLIKSLDSWITKNLNNRYYIGQGIGLDSSNTIVYNTQIGFESEKELSFFTIACPLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0236341_1000502

Overview

Ecosystem & Geography

Associated Families

Sequences