Scaffold Ga0236341_1000489

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1000489
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24355
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019784	Metagenome	227	Y
F030373	Metagenome / Metatranscriptome	185	Y
F058576	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_100048910	F019784	N/A	MIHLNVFELDKIKKICEEVGAEYFVLEQNNKSGIGSILTLTYDTEVAGYPAKMTIEVSGVESW
Ga0236341_100048925	F058576	AGG	MKLFARSGGHWLFWSGFTYLSLTAVVAFSPYSQYTMCVQLVWLVMVALPLVCNPLARWLNMKETHMFDMFKKKTSNVVPFPKQEETEHGGGDGGGYIPEPKKPSVTYYSLGMTSENRLEFKMGYSAITMNHGGVTNLIEQLETFKKQLAQYEGIEEEENV
Ga0236341_100048928	F030373	GAGG	MMLNYNEIELMEMARDYEAMEKVALQDAEELRQLRDGERIIVPVDVEHARTMFKLASYYLSQHDKEFTLTMEM