NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1000362

Scaffold Ga0236341_1000362


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1000362 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29108
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (73.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F006506Metagenome / Metatranscriptome371Y
F009334Metagenome / Metatranscriptome319Y
F010472Metagenome303Y
F011276Metagenome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_10003622F000652GAGMSGFQSKRASALAKLQGAGMKTVRVETLLTQELEVPDNWEREDVFDFLAEFQSFRTAFQGVSNEDQTARIVDLGVVEERVTEMGEEAYDE
Ga0236341_100036220F011276GGAGMIKGLQGVTGITVSGGNTSLPYVGPNSSNPMTGMIRINNTELEVFNGSNWQMISSSYATVSLDQDVLDVIQWARKERDRHSKRQALIKDNPALQKALESIERAEANFDILAKFVENDRVTVSGT
Ga0236341_10003624F009334GAGGMKIATVEGQTVTIGDVVCFKCDIEQSGVIVDIKKTYAGMSLTLESKYGFEGGYIGGETITTELARDCWLIG
Ga0236341_100036264F006506AGGMKKLIAILTLVVLSGCSTILDYIPSGWDANQAKVITDIQLEVKHFDCKADLKPQVDQLARDVEWFDIYAKTKPTRDIAKLTGTITNTVKELQDRVAKGPVSPMYCDLKKKILQQQADILAGSVQGRF
Ga0236341_100036266F010472AGGAMSQVLTEIMSSGHPWFAERAQYALQVGQAVQNGEMSADEAREILADLISTEKLQEAAADQQAVAALVFGVTQLAGMLA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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