Scaffold Ga0236341

Basic Information
Taxon OID	3300022591 Open in IMG/M
Scaffold ID	Ga0236341_1000319 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Laval University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022591 Open in IMG/M

Scaffold ID

Ga0236341_1000319 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Laval University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30756
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (67.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

30756

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (67.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location Name	SAS2a, Kuujjuarapick, Canada
Coordinates	Lat. (^o)	55.1491	Long. (^o)	-77.4866	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

SAS2a, Kuujjuarapick, Canada

Coordinates

Lat. (^o)

55.1491

Long. (^o)

-77.4866

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003080	Metagenome / Metatranscriptome	508	Y
F009462	Metagenome / Metatranscriptome	317	Y
F011665	Metagenome / Metatranscriptome	288	Y
F015338	Metagenome / Metatranscriptome	255	Y
F024559	Metagenome / Metatranscriptome	205	Y
F026795	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_100031915	F015338	AGG	MALKNGKPNPLNYFDLRRVEFAAPHFKYTTIEKYNTPLLRNLDEWIKNNLNNRYYIGQSIALDHNNTIIYTTLIGFESEKELSFFTIACPHLNLR
Ga0236341_100031921	F011665	N/A	MQNQINLTPVTQFVQQVRSAELSQAKEVKMSLAQARMLNMALTELLDKVNQDFETMFNQLKQSVDTEVVSVSMDGGGFEENKS
Ga0236341_100031931	F003080	AGGAG	MTTAKDLTDQLINRAKNLQEFVVEREFDDVPLTGVIKFDVQHTVGQPARIFVPALTQQEAEEMVDEWFEEMR
Ga0236341_100031937	F024559	AGGAG	MIGALIKIAFGVALILIAIIFGPIVGIWSLNTLFPVLHIPYTLETWCAYFLLFGSLTGLRFGLNRRKE
Ga0236341_100031940	F009462	AGGAG	MELHESVRDTYKEMVIKEHPGFRLTLKKHEVLSPKGLFSVDMVQESLKDGEVVDSQTYNFFMTKEEMQTLAYGLTA
Ga0236341_100031944	F026795	GAGG	MAKNYNDYKYFENRPDVVKIFDDLEKFQDFCRMEMAPFDESHLYNRESWAWRNYEKSTRPKKPWNGERKPYMGKNPRPQYNNNNERFSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0236341_1000319

Overview

Ecosystem & Geography

Associated Families

Sequences