Scaffold Ga0236341_1000272

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1000272
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33006
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (66.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002689	Metagenome / Metatranscriptome	536	Y
F031035	Metagenome	183	Y
F063624	Metagenome	129	Y
F082586	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_100027214	F031035	GGAG	MKEVITLRIQDLMAKGKELEQQIMQVNGALQQCQWTLEQLEKQDAEEIDKPENV
Ga0236341_100027247	F082586	GGA	MKEFWFWVAIVTLIIFCLIGVSFAIIHITKQIKMMEAMIVRLEEKDRKQQILLRKYDE
Ga0236341_100027248	F063624	N/A	MAQSAVGAIRAGCQMLSEGKAFIDDTKSEIEGMVGQVKETYETVAGLWDWVKGLFGTSTKSIESPVAKQAVSEPAKPSKKSKQAEISFEEFQARAVHDICENLKVYFEAMRQLKLHCRELEEQALTTERVADSAIDRIEMEWQMNQLSAQLKQSMIYGTPESLGLGSLYKEFLHKYDEILEEQEVARALKAKKQRDNAWQHEHRNQILIAKLTYAIAVVVGMIEIIGLYLAL
Ga0236341_100027249	F002689	N/A	MTTIDETEARLATHEEVCAMRYEQINARLKRLEQIIINSCGALLLGMGGVIFSFLMHK