NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1000215

Scaffold Ga0236341_1000215


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1000215 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36438
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (78.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001629Metagenome660Y
F053026Metagenome141N
F058637Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0236341_100021524F001629AGGAMNFSQGKLADSLVDEMLELIHKYDETLYMATVIGCVELVRQQLIIDAMGEDDE
Ga0236341_10002153F058637N/AMADSPIDLVKYGALWQRVEEYEKKFDSMERKIDKLEESIDKLISMADKSRGGLWVGMIVVSGLSSLVGFLSHYFTFK
Ga0236341_100021539F053026N/AMKATLAVHLLIAMGMDEHLFMKWQAGKNSKSTKKGPGRKHKQGR

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