Scaffold Ga0236341_1000002

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1000002
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 227819
• Total Scaffold Genes: 233
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 170 (72.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F023062	Metagenome	211	Y
F023777	Metagenome / Metatranscriptome	208	Y
F024029	Metagenome	207	Y
F051136	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_1000002179	F000652	AGGAG	MKVYLTTILRQELEVPEGWEREDVYDFLGEYQSFRTAFQGVSNEDQTARIIDVMVLEEEVTEMGEEEFDK
Ga0236341_10000022	F051136	AGGA	MNDKQWLERVSLAYKAYPYPNKDIEAFVTWIYKQYGVIPPNDKK
Ga0236341_1000002223	F023062	AGG	MSFELDPVKYGMLWSKVESYEDKFEAMSKKMDKLESSIDELVALANRSRGGLFMGIGIISAISSLVGFVAHWFSSK
Ga0236341_1000002229	F024029	AGGAG	MTEYIWTAAGTDIEERWRVKYGWVRPSELPEYQAKYKYFQELPLRKLDDQAKQQYEAVLRKAKVARVR
Ga0236341_100000273	F023777	AGGA	MAVKSWYLSVVETESHKPVLHKMFFTAPKMNEFIKEQEILEKYPKPTYYIVKENY