Scaffold Ga0212090_10335457

Overview

Basic Information

• Taxon OID: 3300022561
• Scaffold ID: Ga0212090_10335457
• Source Dataset Name: Borup_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1143
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema → unclassified Tychonema → Tychonema sp. LEGE 06208 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Borup Fiord, Nunavut, Canada
• Coordinates
  • Lat. (^o): 81.017
  • Long. (^o): -81.583
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006886	Metagenome / Metatranscriptome	362	Y
F069716	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212090_103354571	F069716	GGAG	MLANRNQPIVAGLLSLSVAGIVGATALQFNDRIEYKIGNRVESHPAWLVPPKAEFRSVERGYGGIKILLALLATGGMVTVMLIARKEGELEPTRQRIKGYQQRAYEFGFAAESAYQMSTTATRYKKLADADEVAIEGEIEAAYMESLGIDPNQQQPVLTGTATLDSVTNPSDKVESTTAPTIE
Ga0212090_103354572	F006886	N/A	MNISEFDSSEFDYLNADNFSQSESTNQPTNPEVTNIERFWNLTGNWGEFGSYFGAGLSVSLIVRAIPALIPSAVILIPAVGLGLGLFGLMAEGAAKLRSQLIFLAVTTALIAGNWDAWQAWIIANSQLLIFSLALIIITLGFVGAQIWSKLNVSQ