NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212090_10034042

Scaffold Ga0212090_10034042


Overview

Basic Information
Taxon OID3300022561 Open in IMG/M
Scaffold IDGa0212090_10034042 Open in IMG/M
Source Dataset NameBorup_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5837
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (21.05%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameBorup Fiord, Nunavut, Canada
CoordinatesLat. (o)81.017Long. (o)-81.583Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025774Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0212090_1003404210F025774N/AVYVSAVKPDMVLLVPVPVIAPGLIVQVPDAGKPFNITLPVAAEQVGCVIVPTVGVDGVPIFVVITTLADAEEIHPAALVTV
Ga0212090_1003404214F025774N/AVPAIAPGLMIQFPAGKPFNTTLPVATKQVGCVTMPTIGAIGVPGCEMITTLADAEEVHPNEFFTV
Ga0212090_1003404216F025774N/AMVLLVVFPFITPGLIVQFPAGKPFNITLPVAIEQVGGVIVPTVGAVGVTGCALMTTLADAKEIHPVELVTE
Ga0212090_1003404217F025774N/AMPPGSMVQFPAGKPFNIMLPVATEQVGCVIVPTVGAVGVTGCALMTTLAEAGEVHPAALVTV
Ga0212090_100340424F025774GGAVLVVFPFIAPGLMIQFPEGKPFSTTLPVATAHVGCVIVPIVGADGVTSCALITTLADDREVHPAALVTV
Ga0212090_100340425F025774N/AMPEIIVVAPVPAIAPGLIVQFPAGKPFNTTLPDATVQVGCVIVPTAGAAGVDGWAFIATLADIDDVHPAALVTV
Ga0212090_100340426F025774N/AVYVPVVKLDMVLLVPVPDIAPGLIIQLPDGKPFNITLPVASAQVGWVIVPIAGAEGVTGCALMTTLADAGDVHPAAFVTV
Ga0212090_100340427F025774N/AMVVLVVFPLTAPGLIVQFPAGKPFSTTLPVATAQVGCVIVPTAGAAGVAGCTLITTDADGDEVHPEALVTV
Ga0212090_100340428F025774N/AVPAIAPGLMIQFPEGKLLNTTLPVASAHVGCVIAPTVGAAGVEGCILITTLADGIEVHPAAFVTV
Ga0212090_100340429F025774N/AMDLVATAPAIAPGLIVQLPEGKPLRTTLPVASAQVGWVIVPTVGDEGVTGWVLMRMLADDNEIHPDALVTV
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