Scaffold Ga0212090_10001399

Overview

Basic Information

• Taxon OID: 3300022561
• Scaffold ID: Ga0212090_10001399
• Source Dataset Name: Borup_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50983
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Borup Fiord, Nunavut, Canada
• Coordinates
  • Lat. (^o): 81.017
  • Long. (^o): -81.583
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018759	Metagenome	233	Y
F050648	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212090_1000139913	F050648	AGG	MPSALDTIAHVILPNTMKLKGASVVVSAMERRDVSMFANVWEQTGITHTPQVLAKERDEMWRIGVLQMPAPSEMGEAYMVAFVAKKNDAAITRYFLLEYDYVLATKTVRTIVTERDGAKTTKRGEGPAITGDFAADAGAFVDAIMLILSPVSLKKD
Ga0212090_1000139925	F018759	GAG	MFLAMSTAALARAYDELRPRVLERLLDMRATLDPSLGRLDEATARGQMNAVLEHLGNFLATGDLGSHRAFLQTFIAMRAAEAQGPASVLAMMVAIGETAAQVVQEQLAGTPDGSELTLLLTRVTSSTARAVNDIVAEELERRLAEWHVVAKGGS