Scaffold Ga0212123_10469872

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212123_10469872

Scaffold Ga0212123_10469872

Overview

Basic Information
Taxon OID	3300022557 Open in IMG/M
Scaffold ID	Ga0212123_10469872 Open in IMG/M
Source Dataset Name	Paint Pots_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	824
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033968	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_104698721	F033968	AGGGGG	MKQKWGREDDAGDFPSDKAVWTIGAFCVALLSVFAIGYYRYMRVWTPLQRHYLTTYVGTPVAGAFRTDGCYTLLMVVTRKGTRMALDNEVVPFVTEKGESTFTLTEEAIKIGDSKLEWERARYDNAKLHEFLSHWIYND

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