NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10218917

Scaffold Ga0212123_10218917


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10218917 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1393
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F002396Metagenome / Metatranscriptome564Y
F004392Metagenome / Metatranscriptome440N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_102189172F001528AGGAGMSEKNQIVVVLIVALFLGAFIDRITALKIGAGVVLLWTLQNQPTVFECIRKLFSFVQRRPSVREYRGGVTTFRAS
Ga0212123_102189173F004392AGGAMPVNGPETIADSKTSQPVASEGRSVRATRDAKPAVGRGAATRRRRDRQESSQTNGEERFFLATANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNNPAS
Ga0212123_102189174F002396N/AMRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIILLEILLGLFFIGCALAARARLRIQARSQVKEGPEGSTNAKAKWFDRYDVLMILTVIVIYSSVSGLLRHAGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRKAETQRSRVDAGEKQEIARKETVERCQ
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