Scaffold Ga0212123_10112290

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10112290
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2191
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001528	Metagenome / Metatranscriptome	677	Y
F002396	Metagenome / Metatranscriptome	564	Y
F003157	Metagenome / Metatranscriptome	504	Y
F004392	Metagenome / Metatranscriptome	440	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_101122902	F003157	AGGAGG	MFDPDANQKRDNTDLWGFARFGGLDRLDWLMILISVLLGTIAKQHHVLDLPDWFLEWVSPFLLMAFGYKARRKITEVVESRRDRRKDTREE
Ga0212123_101122903	F002396	GAGG	MRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGVVLLEILLGLFFIGCALAARARLRIQARSQVKEGPEGSTNAKAKWFDRYDVLMILTVIVIYTSMSGLLRHSGLSEGTVGILPLILFAAGILLKPRAVQVIERRRKDRTAKTHDGRSHVHADEKQEIARKETVERCQ
Ga0212123_101122904	F004392	AGGA	MPVNGPETIADSKTSQPVASEGRSVRATRDAKPAVGRGATTRRRRDRQESSQTNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYRVTEFQTRADIGRSGEPILRKETLKKNNLAS
Ga0212123_101122905	F001528	AGGAG	MSEKNQIVVVLIVALFLGALVDRSTALKIVAGVVLLWTLQNQPEVFECIRKLFSFVQRRPSVREYRGGVTTFRAS