NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10068360

Scaffold Ga0212123_10068360


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10068360 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3080
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F001367Metagenome / Metatranscriptome713Y
F013395Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100683602F013395N/AMRRALIGGALLLSSAAITARSKTESLLFVFLRVDREQDIAILRPMIAPDIGVQLDSGPRHLESGAVLTCEMLPREHEAIVEGQVAKLSEIVLDCGDHKFVVKTLDFRPQLK
Ga0212123_100683603F000512AGGMIQILRETHDTPESVAHNLELAGGINRFREPNYRAVWGWNRLAWIGGKFEERDAATGSLLREVVELRQEPKYPAVNRWHIEKWLPPETYGSPRAWWAQTMEVEAGRSIPALGPYPARGEYEHCFTLEGPRGEFVQLTPTVAEHIARAIEWSRRHPRSAGKRALKDREQRQEQAYDAWAYDLLDEAVPAFHRQPFVTVA
Ga0212123_100683605F000739GGAGMMTRIELWLKGLLAAAISGAAGGVLTGFAAVGIDPQHFNLQAGIGATFRIGLAAAMINAVIGVAAYLQKSPLPSGD
Ga0212123_100683606F001367GGAGMPVVGSSAYNTAGQITSLVRALLNDAQGNLFTDAVLLPYANSAYRKTQRALGNAGAGGFIQDDILLVVPAVTQVDTSLQVSITDATAPPNQLPTDLLVPVKLWERTNGSSDDFVEMVDL
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