Scaffold Ga0212123_10024863

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10024863
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6493
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000552	Metagenome / Metatranscriptome	1033	Y
F021001	Metagenome / Metatranscriptome	221	Y
F035434	Metagenome / Metatranscriptome	172	Y
F040835	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1002486310	F021001	AGG	MKIAKQIVFRYNGDPTTEESDLDMDGDKSVPEQGTLIERRGERWKVAQVSIETSTEEPFAVPIYRVSLTNKL
Ga0212123_100248632	F000552	GAG	MEAMRRKLVWAKRQNFQGWACSECAWVFNPLGPPVGESIDEMKIHYEQRRDKEFTSHVCAERPKATKNPR
Ga0212123_100248637	F035434	N/A	MVPLALSLIPFLAVTLRRFVFTGMGREWPVGEIDAPRPRQNGPLEQGLYIIDPTGLTLVAGELENRADGADPVDRKYRAQRYLCRIVALTGATQIGGGYALDVDTTRFKVRDGYVRRVQDVTNPKCGYEETCFYPAHEEMPKAEQIATALLQLKNNPALFDGWVAQNHVAFKADGQVFTRAQ
Ga0212123_100248638	F040835	AGG	VRSNRHATSTQTGSTPAERAAEYLERIAWLTGAKQDDDGTYHLTAGRRHFLVDSNSVRVTSHRAESTCFSVVAYPDIPRAELIASALLQLKNNPRLFEKWRERQGDAFKANGQIFGDTYRLTRDET