Scaffold Ga0212123_10023237

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10023237
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6852
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001147	Metagenome / Metatranscriptome	765	Y
F014313	Metagenome / Metatranscriptome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_100232372	F001147	GGAGG	MAQTIWIHKLADAKKVDADGMDYICEHLFQAFTQSGKLTKAKGWNPIPDASAKDGTTYRALFCDSCGKNYNNGNVRMAKEAVLV
Ga0212123_100232376	F014313	AGG	MPDWQELVRQRLPGLALDATEKDEIHAELAAHLEESYEVFCKEGLAQREALQRTLAQVADWQDLQRKIFIARRREQPMQKRVHQLWIPGFLTLILSMIFLITLQELGFQPRIVGSGPNTILFYAPWLASLPFFGALGPYLSARRGGLPRTMLLASVFPVLALTTAFLLMFPIGFVIEGIIGRAVDLSTAATAILRDGIGWILVPGAALLVGGFLVHMRKPRCAQIT