Scaffold Ga0212123_10020798

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10020798
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7478
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082566	Metagenome	113	Y
F105555	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_100207981	F082566	N/A	MHDAAHAFSRRQGLCSACLVKIFNVSCQLMGPAVNFDLFRSSRLREFGNLRQPWFVGLLFAVLMAAQALGFLVLGTGRAGRGLAESILVLVSFLALACAWNTFRRAQGITALFWFLFAAVQVVLLVPTAFQTYDTLFDQTILSDSTWRLLYCLYGAPILMMLFLPGDHRRARVKFEIFLDLFQVAIVVGLIYSTFFFFPAQRMLP
Ga0212123_1002079814	F105555	AGGAGG	MKTNEGSKHEEQLPHSYNPSRKKHYEAPKITILKLHRAKAQLVARALAGDRDAEDLLELASKNHPNWCV
Ga0212123_100207983	F105555	GAGG	MKTNEESKHEEQLRHSNNPSRKRHYEAPKITALELDQTTSQLVARALAGDRDAERLLELLPKTD