Scaffold Ga0212123_10014981

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10014981
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9771
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F014888	Metagenome / Metatranscriptome	259	Y
F025325	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1001498113	F014888	AGGAG	MNKVLEVVLTVVALAGLYSAIQTNNSPPGNSAIRAEQAVVIADGSDPMPLCRAKSCRPTQ
Ga0212123_1001498115	F003832	N/A	MKSTAKLLRSEANWPPAEGEIISFRSSSGSETSVLKEVRWGLVWRDFILEDGRVISEHRISGCPQPQVWRKISEVTDNEREECEERLLSMAGAGMDPRKRDQPFWAELNQYLAYTYLRYKQAASCKIA
Ga0212123_1001498116	F005268	GAGG	VSRSDDETEEQQAWRALSEAGLVEIRLDEFAEKIGDVKRIVIVRLRELLDFNTGIKERESAAYSLGTLRGLELKLLANPPKPPDSSEM
Ga0212123_1001498117	F025325	AGGAGG	MLSDRPKRLKKSWEELTAAASMETDPEKLGTILEEILAALEERQRTLSLPQNAFVGNRQL