Scaffold Ga0212123

Basic Information
Taxon OID	3300022557 Open in IMG/M
Scaffold ID	Ga0212123_10008428 Open in IMG/M
Source Dataset Name	Paint Pots_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022557 Open in IMG/M

Scaffold ID

Ga0212123_10008428 Open in IMG/M

Source Dataset Name

Paint Pots_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15721
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (77.27%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15721

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (77.27%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff, British Columbia

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F010114	Metagenome / Metatranscriptome	308	Y
F029198	Metagenome	189	Y
F061167	Metagenome / Metatranscriptome	132	Y
F097840	Metagenome	104	Y
F105952	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000842811	F105952	GGAGG	VSTRVGATNKKRADSIGSAGPFFRDKLDSRVTVLQIERALAELGIHAKLSDIVAKARFIEDGIIQSPSCRKRGARGE
Ga0212123_1000842813	F097840	GAG	MTQLAVRTVMQAAAVLKHKSDEGVEMYSTTSLNGVPTIQRDGHNILGVWDQNWDFANEICDLLNSLEDDPHIFLTEHDRKWLKAMDRAFRKVHHA
Ga0212123_1000842815	F029198	GAGG	MDSNANSRAVRVHGEVIVLHCWACGTAHCVNLELSVPGELAHMVCSNRNCGMSMFLVNELVVDDKSRKQMTKTELNASVTYSRFWK
Ga0212123_1000842817	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVTDWAEQAKRLVTKDVLPKDLIVDLTELSFVDSVGEQLLNWLASVGAVFIAGSVYAAAVCDRLRLPPMQKMTERRKWRHGSSKESSSIKHSHSGEAF
Ga0212123_1000842818	F001596	GAG	MSWFNSSTAPVDARSHASPVEVVACFQNQRNLLGRLAFLITGDHATADQAVVQACEFTLQGNSPFRDWLLEWAKAATLTSAISRGTKAIRICEAAYQDRRCPHVEHLSQGDAAERAASLGLILGTDAQTVLTELDALCRAILVLRLAIRSSIQDCALRLNVSRAAVLGANCHAMRWLQMRQVKPVEEDHGASHAV
Ga0212123_1000842819	F010114	GAGG	MIIELNDDDTRLLYTVLLAQVQEHLSYADNSEVAERLYRLATRFERRVREVRNMTTA
Ga0212123_100084283	F061167	N/A	MRRQIFDAIVIDCAQDTLDMQHFTAKAQGLQPSLAVFLADEWGDELASGLEELGHLLTMLEDDECALLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212123_10008428

Overview

Ecosystem & Geography

Associated Families

Sequences