Scaffold Ga0212123_10005184

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10005184
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23467
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003293	Metagenome / Metatranscriptome	495	Y
F003398	Metagenome / Metatranscriptome	489	Y
F014407	Metagenome / Metatranscriptome	263	Y
F029572	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000518412	F003398	N/A	MGPRNFEPPSLSEVCTQVKHLGYAASERIRLYGEEYEVVSDPFPEDDGIAVHVKTKSNSTVRVLQLPATVVQSVNGRGTKAA
Ga0212123_1000518418	F014407	GGAGG	MRTCFYCTLIFISAAAFGQDTDFATGPQYLITTGSPMFARPISTPTLSFASPPLEVGADNATARLTAGAENQTVLLPPADTLPQVDFFYFYYGPPPLTVIEISFAEPSSAHRELPDSILDTGVWELTGVQALRERGYGVTLPEAAAYSRAHIRHATHVYTNADVDRLHGAS
Ga0212123_100051845	F003293	N/A	MARRPDRKKAEILSEDELKELRHNLAHLSVGAVRDLYDQAYRDCRLIYHRLPTPKQIQVLVQAWKQLWKWR
Ga0212123_100051846	F029572	N/A	MPKRNLRVLKWLGTIPAVAVCTLCNREFKVSLPALKRVTEAQESLRLQFAEHKCTGEHTTADSTSAQE