Scaffold Ga0212123_10004901

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10004901
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24531
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F036810	Metagenome	169	Y
F041733	Metagenome / Metatranscriptome	159	Y
F045057	Metagenome	153	Y
F045709	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000490122	F036810	AGGAG	MSIQTSQDTGVFARASWLALAAATCKAIQLSIERRTFERKMETIVRAANAHHSCGRSPGTIHFKLLRTCADELCADFAQRWNVPPELLEAQIPAISKLKSLADPPAKPNPAPLVGLGIVAAAATFLLLGVLGGLASVGYHLVGGR
Ga0212123_1000490124	F045709	GGAGG	VNLTPSQKGSFLAGIGLWVLIWASVWKADDIAQAMCIQRWFNSNRCLRWIGQHKSTSLLATELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLLLPFLEMLLRQKGTVIATLQQE
Ga0212123_1000490125	F014894	AGGAGG	MVTQKRKCTMRMSIGIPGFSVYFEHHQVKPFIKDHSRKAKELFDERVVPAVLLGTCKALEVVANNTADAHDYLIGKLKTKQSA
Ga0212123_1000490128	F045057	GGAGG	MRDASIRESLTQKQWDRIFYRCPGAWAGNKPEPNSHGSIVINGGNILAAIQYLNRQRLRVLYAKAPLPEIWCSGGGIILGIGLRY
Ga0212123_1000490129	F041733	AGGAGG	MLAIKPDGKKKITFTDLLICGVLGAAWLPLGIVAAAGIGGYKYWQSKSEKWAEEYEKDHPEEVKKLKA