Scaffold Ga0212123_10004414

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10004414
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27007
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010268	Metagenome / Metatranscriptome	306	Y
F020407	Metagenome / Metatranscriptome	224	Y
F026653	Metagenome / Metatranscriptome	197	Y
F072557	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000441422	F026653	AGGA	VLRRLEAFVFFFAMMLAVTLEGACVYWMCGHPRPYATTEGSLNFVGEWTSLALPQGWLLGALLVLAYRVTAMFVPPRRWTDNEFLQNRRAFLRLWRWAMALVAMQGLTLFLGRAAAAL
Ga0212123_1000441423	F072557	GGAGG	MLRDDLQKRPDIGFRGTVADHLLEPLSPFDANSVRRPQRWFVLSLIVSLAALGSVVYFNFWN
Ga0212123_1000441426	F020407	AGGAGG	MVKQRFLTHFKPWLFAVTKVVGLIVGYQLFDETRTYLQYAPLNIVDVVVAATVALLAIGLLCGLWAWGEWCWFKLRSLRRFCSELKQAFNNRRHPRTVRTSRSVAGTMV
Ga0212123_1000441427	F010268	GAGG	MATMIASPPDEKASQSSNRLASKGNRRARSAGEEETMSGARFFLPKSGANGHAPELGREFSNEGEARVEALKLGVTYYSLQEWRPVADFAGKNPELKREPVTRKGTG