Scaffold Ga0212123_10004270

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10004270
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27692
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (78.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001352	Metagenome / Metatranscriptome	717	Y
F007233	Metagenome / Metatranscriptome	355	Y
F015496	Metagenome / Metatranscriptome	254	Y
F033134	Metagenome	178	Y
F037842	Metagenome / Metatranscriptome	167	N
F044617	Metagenome / Metatranscriptome	154	N
F047788	Metagenome / Metatranscriptome	149	Y
F065986	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000427018	F015496	GGAGG	VYSADLVRQICGEVVNEKDPEKAQDLMSLLQAVIKDDQEDIRIRMAFLAKKYTFISDSKAAD
Ga0212123_1000427019	F044617	AGGAG	MSTSPQPSRQRPTVTAITAEERRKLDERVRDKHQRLRNRYPEIYGKVVDWIHHYIEDGTLYICIRFQDKTDFAIEFSPQIVRVGTELCDSATGDFDVIRNYYQEERE
Ga0212123_1000427020	F065986	GGA	MSNIAKRQGRMIRKGKEVRFGSVRIDLIGPTALLHNREAKGAAIDFLRTEILASKDWLKDCARISPSLKRFRLVSIRK
Ga0212123_1000427022	F037842	AGGAGG	LKQKSVKTRGEGVEYPALISKVIRQVRFVNDDDYTALTIEFDDSTLVSFRFRASIAFSIDPELSTVEGGNIVRWRQLKTRPVVRRVARK
Ga0212123_1000427023	F033134	AGGA	MKQEQESKQLITFSSLHIEVLGPRELGNSQQAIRGVTEFLHSIELDVRNLLRERAETSPILEGFRLRFG
Ga0212123_1000427024	F007233	GGA	MANRKQREHQRQLNQDTFSDGIKGKVVEAVSISNELECRYISLEFGDKTELTITLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD
Ga0212123_100042707	F001352	GAGG	MTSRELGPEWVLSRFISSIASHQDEISELVVVARRLWPRIKAHAHREQPEKNSEEALVLATEVWESVLQSVAKTVQRSNRQNWRIMNTEAYLFGAFHHRFNRALKKERRRREIIQHLPSSGDLERLRQAHDSKVVHDLEQSIQVNEAVRRMDDWTRKVWAARQYGYSWREIAVHLGLTEPQAKLRFRYAIGRLRARLGRTA
Ga0212123_100042708	F047788	N/A	VPISTESRRVLKQQEEFNVEEKRILDLLSRGLSQDFPNPQRAGCPDSAMLKGIALHKVPLAEADPWLDHFSSCSPCFQEFTQFRKQAVDGRRRAQLWLAAAAVLLFAVAGWLWVRTQPSVQTSATVVLDLRERSVARGENSAETKQLALEIPRTAKHLVMDLPIGSKEGSYDLALLNEAGGEVSRATGTATLEDHIVILRADIDIRNLSPGLYFLGLRQLGPEWSRYPTRVN