Scaffold Ga0212123_10003272

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10003272
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34574
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002349	Metagenome / Metatranscriptome	568	Y
F002450	Metagenome / Metatranscriptome	558	Y
F060172	Metagenome / Metatranscriptome	133	N
F099744	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_100032723	F002450	AGGA	MMETSTAEHTNRLATNRIAAHLPLFIYGSLLGGDPFYEETFTISINETGGLIWMAGRVEPGQQIMVTNQANDQTQECVVVSVVAQPAGRYVAFRFSTPMPQFWHGLEIGKGTLRSWVEYFIEALILQIRGDRTPEKPVKLL
Ga0212123_1000327234	F060172	AGGAG	MKTKFTRIIAIVTFGLIAICTSASSASAQNAFRGKFTLPNDVRWGNASLPAGDYTFSLSSTTMSGRVFLQGPNGGAFILTSVIDERNEGDSSKLTIEYRGGTSFVRSMYLADLGVELTYHAPKTPKQDVVLAQGPVSTEQVLIAKK
Ga0212123_100032726	F002349	GGAGG	MIVCFANQCEYCRSSIVPGQRWVREKIYDAALNGRDPSYHRYHAELFATQRESCWEKHQLEREMARTTTCAA
Ga0212123_100032727	F099744	GGAGG	MFLSSFDNLKRDRCGNHTLLAVAGDLETARLRLSQFASLTPGEYFVFDPRTQQIVAAMHHWGDRQVR