Scaffold Ga0212123_10002467

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10002467
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44158
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000299	Metagenome / Metatranscriptome	1341	Y
F000414	Metagenome / Metatranscriptome	1169	Y
F037320	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000246716	F000299	AGGGGG	MENGQIASGMMRPVERYDVGHVEEVIRQAHGELRHLLQQRAEIMKRIGTVKQTISGLANLFGDALLSEELMELVDRKSSGRQPGFTKACRMILMEAGRAMNARDICDYFQQKMPALLARHKDPMASVTTVLNRLVEYGEAQAVVSNGRRAWLWIADVPAEPPSTRGESRMVAS
Ga0212123_1000246734	F037320	AGGAGG	MSAGSMFGLILYRHALRLYPAFHRERFGEEMIAVFRELQAESATKGLFPRSWWCIREIAGVLAGALQEHWHAAGGDSVWLWFPTRRLTMHNEFRFPKTTAILMTIILAGVVMTIQRGEAIQQSLPYTNPPVAPIHPAHSTLLPGIVFGLVFFYAAGLVGWAILFAMRRSGVA
Ga0212123_100024678	F000414	AGGAG	MSAPSRRPEIRRRRTRKEKIVQLRKRLATAKTDADKTRITAKLHKLAILSPGQPLLKEAA