NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212123_10002395

Scaffold Ga0212123_10002395


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10002395 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45498
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (79.17%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009642Metagenome / Metatranscriptome315Y
F011866Metagenome / Metatranscriptome286Y
F019174Metagenome / Metatranscriptome231Y
F022765Metagenome / Metatranscriptome213Y
F037375Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000239510F009642AGCAGMTKVNGEAAAKAGDVLFRYMQARHRFTNKAERPLPAHELASLIGRGKAEFDEIYVEPKANPPIVLDGKADDFFSAVIKKSYSAIPACEPQLLSAWRMYVLRDGPMPLVPAPRLTPGGHERRRAAKDQNL
Ga0212123_100023952F037375GAGVQNLQGVLSGRNADLTAMKTAKDNIVIVRLDDRRYAVAVDGVARYVGTEEECQRRVALLALKNDRAAQDEALARLVRVMR
Ga0212123_1000239531F022765AGGAGMPNREDVVLAEAEQDVRELEEYVANQHIRVSELCAAGRSDDESKAREGLFLLTDALDIARRRLQSELKTRGI
Ga0212123_1000239543F019174N/AMVPLYAARIEDLGPGDFVKFECAACGHDALIPPSSLLNGLRLPPATRVLDLERRLRCRECDAKGNATVSVRWGDRADL
Ga0212123_1000239549F011866AGGAMLYVIEIRRGREELSTLMGRIREWLDSRRFEPDAFRCTTDDEGVTCRLEFKIESEAIAYAKAFGGELRPMGDNPAL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.