Scaffold Ga0212123_10002356

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10002356
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45997
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004016	Metagenome / Metatranscriptome	457	N
F017248	Metagenome / Metatranscriptome	242	Y
F036989	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_100023561	F004016	N/A	AEFVEAEDLAQSALGVCDHLRILTGMAVPGQRSLHRGWSSRQPRGVGFCAMDPNTAAGWRDLYIGMVGAGASLTGLTFVAIALDPHQIERTKLLRLRAASALWCFVGVMFIGLAVLTPRPFSTVSAAVLGAGGLAGAVLLFVRTVRQRIFQQAHPGATVFRAAGNIFGFVLAAVGGFSFIDVEQGWVFATLALACVIMLSSGIFASWLLVLQIGVPAGDKSGR
Ga0212123_1000235630	F036989	GGAG	MGDWNVFFATSAGSAATLVGLLFVATQLHLGVFADPKNRWAALAQSTLTILSVNFALSLFFLMPILGPQIRGEVVVLAVVVAVWRGIRIWWPVVRITESGRRHRLAQSFWLVLLPDIVYVYLLTGGIGLLRGDSTAVLNVGGALLSLFLVCLRNAWRLVVNVEQESS
Ga0212123_100023569	F017248	N/A	MASQAPIKVREQTKERIRYLAALTDATQADVVDRAVAEFAERHADEIATGMRRAREVLAGGDAAIAAYLLNEPLENVKRVAGSA