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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10002281 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 47061 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (86.36%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000410 | Metagenome / Metatranscriptome | 1170 | Y |
| F000900 | Metagenome / Metatranscriptome | 845 | Y |
| F001932 | Metagenome / Metatranscriptome | 615 | Y |
| F003314 | Metagenome / Metatranscriptome | 494 | Y |
| F015125 | Metagenome / Metatranscriptome | 257 | Y |
| F066997 | Metagenome / Metatranscriptome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_1000228110 | F001932 | GGAGG | MPRKLALWVVLLIVGFLTGFILQYARLQRAQQELSASTKQLGSCQATEQLSQLRDTATAMFLEAVQKNYGKAGEYSKEFFDQAQRIQSSTEDPAVRNLLRDTLATRDQITADLAKGDAALSEIQPLVSKIEQTAKH |
| Ga0212123_1000228111 | F003314 | N/A | MTTKTIAAYLEDERQKGRDTQLWTEEEAARIQPLRHGHHRTAKQPKLEMPSAVKTAPKARKTAAATRKKPRTARKTTTKARKVA |
| Ga0212123_1000228113 | F015125 | GGAGG | MTDQDASRSQNIKYPHWQREFEAALLEGDPQTLRQRVDAAETAIFLRSQALVGNAQGHAERQAISDAIGTLRAIQKEKLGYPDWNK |
| Ga0212123_1000228114 | F000410 | AGG | MPRKLVWVEEGRFHGFACSECSWRFEPSAAPTGKSFDEMMKNFELRRDKEFTSHVCADHPKTKRSM |
| Ga0212123_1000228120 | F000900 | AGGAG | VGLGTEILFALMLGFLVLGPKRLQTMLLDAARAKAKFVEASRGFKSQLAAELDTDSGAGKTDCSEESVGDDELG |
| Ga0212123_100022819 | F066997 | GAGG | MPHGAASSLQGAVRKIIIKPVIPGEAEKVQISVQSGSNPNQRIRIANTLINDRGEEVPLKKGAAVCL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |