Scaffold Ga0212123_10002274

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10002274
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47131
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (50.94%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007243	Metagenome / Metatranscriptome	355	Y
F022093	Metagenome / Metatranscriptome	216	Y
F034727	Metagenome / Metatranscriptome	174	Y
F079016	Metagenome / Metatranscriptome	116	Y
F103623	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000227410	F022093	GAG	MPILKRVEFSKGLRPDSPRFVLMIEIPDSAAADLTARKVSLEARAYEVAFETTHADRSDKPDYQMNLMSCTPGKVKNIESLGEPSLLAPDACRAWVIKRPSPLQELLDKGWQSRQKSPGPKG
Ga0212123_1000227411	F034727	AGG	MTTDEVLDALSRYKRDSKEDDRQTATKLGITHPILEDWLSGRTRPQKGTLARLAGFLRRVGYL
Ga0212123_1000227413	F079016	AGG	MKPGRADSHEANVGAQELWRELIGIDDRTDQERTFTIYKRSGSLLVVSDTGCERLVGPDHGLSKAHIFQEVMNQFGVHAVRPKPSLYPLPD
Ga0212123_1000227414	F007243	GAG	MTSIHATVLSAERFRELYRLIVQLAPSEFVGPFERLRFKKNPYCGSFGTSVDKSWVTLDYRKDPGFKAGEAFPLWRTD
Ga0212123_1000227427	F103623	GGA	MSTNETVYPRWEREDRVSRFLIGPSLPIYQVEEIKLIGGSMFLASTSDKSNLVGQFESERNAKEACKRAFVEKSTGPAIETSGGG