Scaffold Ga0212123

Basic Information
Taxon OID	3300022557 Open in IMG/M
Scaffold ID	Ga0212123_10002126 Open in IMG/M
Source Dataset Name	Paint Pots_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022557 Open in IMG/M

Scaffold ID

Ga0212123_10002126 Open in IMG/M

Source Dataset Name

Paint Pots_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49541
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (91.53%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

49541

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (91.53%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff, British Columbia

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002349	Metagenome / Metatranscriptome	568	Y
F003467	Metagenome / Metatranscriptome	485	Y
F005897	Metagenome / Metatranscriptome	387	Y
F048525	Metagenome / Metatranscriptome	148	Y
F099744	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000212610	F005897	GAGG	MSYDSKFPDPKNAWHRVLERLYHEDHILYARMNNFSTVQAFLATALAFTTSATTTARNISLIVSLFGFALSLFYISLGFRGVRVIQFWRAYLRLLESIPGVTSIDSHLFEFYRLGHRRGPEETELSLAEGLAIKIETTWWARRSVHDQFPWYLPGFSGTMFIAVGIPMITTCFWVLVLYALFYPHTDMRWFVLALAGGLVLVFLIHLLAGRLVPAPIREGQTHPAPAGDLQSDSNAGSNA
Ga0212123_1000212629	F099744	AGGA	MFLSSFDILRKDRRGKPILLAVVGDLETARLRLSQLASLMPGEYFVFDPRTHQIVAAMEDLRWQVT
Ga0212123_1000212630	F002349	AGGAGG	MIVCYANQCAYCRSSIVSGQRWVREKIYDPALNGRDPSYYRYHAEPFAGQEGSCWEKRQMELEIARTTARAA
Ga0212123_1000212631	F048525	AGGAG	MRKQCLRILIALIGVAGLGMAVRGQVSDQIKVTIPYEFVVAGKTLPAGTYRVNRLGDTDEKTLVLSSLDSRARVMVPSTTVESTQADKPEVSFEQVGGQHFLSKIETADHLFTIPVSRSEILEAAARSRSGTSTSGRSDGSN
Ga0212123_1000212642	F003467	AGGAG	MTWARVVTLIIKTVTAALVLGLLATGGYAQTAYRGKFTLAVETRWGSATLPAGDYTFTLPSHSAPYRLYIQGQGVSAIIQATTAELIVASKRPQLNLVDIADVYAVETFEAPDLGVTFTYWTPPQKHVARKEAHQKTVSQTASTTRTSENKTSIEVHIVGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212123_10002126

Overview

Ecosystem & Geography

Associated Families

Sequences