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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10001953 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 53053 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (74.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000673 | Metagenome / Metatranscriptome | 944 | Y |
| F008273 | Metagenome / Metatranscriptome | 336 | Y |
| F076303 | Metagenome / Metatranscriptome | 118 | Y |
| F080467 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_1000195311 | F080467 | N/A | MLSEKPLQSVSVKRLSLDAIDVENDAELDALTAQVLAAGTKIAESERAEMIRKGIIDEHGNLLKTELPEDMRKDADRDFGG |
| Ga0212123_1000195326 | F008273 | AGGAGG | MNSKNAATRQDVIENSVDHQISTLANSTASPRQLETLLNSELDHDLIAWPRQYLETYLDSDATGRVPLDETQLQDILEAAFDRDATLARDYLEELNGERGPKTLGDTALQIATAHTKGREAEYELLFDPVDSQDLKYLIDKLDVRAWEKQNGQTIPALKTQPDPERLETTTSVATHQPGSGEVDLHDKTTGTDVRKLLGGGELPVGLQSALRQMAPDVRIEKAQTDSGTYRGGIIGETEKNLIQQITSHSAVVHRKDLLDMIPAVGENVRIAYSNENARVLPVKERSKTQELGR |
| Ga0212123_1000195331 | F000673 | AGGAG | VSREPFPRSFRYPSAELREQVRAAVRERGFRSEQAFLIAACEHEIRQGANTEATTQFEARVAATLTNLAKQVQGLQTLAHAQVALTDVFLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAEGISNKNRDTLKGMVADE |
| Ga0212123_1000195349 | F076303 | GGAG | MKRTWMAISILVLVFVVMFVGCKKAEPPSPIVKMMEDAGSGEVAKTSDDGITRWLDQHKAVLLEVKKKCIEVRASNPPANWSATTEGRVCANAFLLDSGIPLKTGDKKY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |