Scaffold Ga0212123_10001937

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10001937
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53520
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (85.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001185	Metagenome / Metatranscriptome	754	Y
F043877	Metagenome / Metatranscriptome	155	Y
F051719	Metagenome / Metatranscriptome	143	Y
F063394	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000193727	F001185	AGG	MPERSGRLEKRIRLAAAVEICSVQNPAATERTTTENFCSLGIRILTQRARELNERLWVWSLDEDLRTLARVVYCQRLPDGRFGVGLQFQGQAVNWSRNSLAGADG
Ga0212123_1000193729	F063394	AGGA	MMFRDARKGQFERRNTIAPLFGDWVVLLAMKHRRAPLPVSSALWKGLLRKGFPNGLDELAIFARRYLFLADARLLLAELRIRTAATTPVRETLSKEEKVAAEERPQTKDAHLCQ
Ga0212123_1000193730	F051719	GGAGG	MDRTSNTDIYKTTIAAVEEAAMVIVAPQEEVMNNQVPKYVTQARATFLLGIPEAEFRRISKESGLGHVERAGNEEETYFTYEELQRICKLACGHQMQAVH
Ga0212123_100019375	F043877	N/A	VQLLEGLSNFAWRSEYAIAFFTLCLFSVPLFLADLLLEASDHEYPFAASPYAVRTGLAAAALLVLAFFSGSSLNAFVYFQF