Scaffold Ga0212123_10001669

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10001669
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59982
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F002750	Metagenome / Metatranscriptome	533	Y
F021509	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000166912	F021509	AGGAG	MSLVNVPQQSFLEKLTNAIHLDYVLKVLGVGGFVWAFLASWHTLGLGVRAGMLSAVAAWIVGSRFSKIYR
Ga0212123_1000166920	F000188	GGAGG	MSVKPELAFDVCWEVYRGAREVLESKRGISALNWKDTGKFLWRPDFRPRLNEWVADFALAGQKALEGPDWSSRMVLFRLYYLGLAPYENARHFLGLSERSWVNWTEEVRNRCGKELLRRRMFPPRKYFS
Ga0212123_1000166926	F000536	N/A	MVEYTPQQMQILERLFAAGFRPIAIPHYESALCLRRGECAAILSPMPKGALKLLAAPSYLVDGNLSVRLKRGPAEVFVWKKTELPATPERLQELELFRRELTAILELPQTQ
Ga0212123_100016699	F002750	N/A	MVEFLAIWLKSKYVCALEADVARLRAENRALMNSLLGTAGFPPVEFSEAPKPQPLPRLRKRSWHQIQAWRESGAAQDKLSDRNSSSAGKDAMA