NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10001614

Scaffold Ga0212123_10001614


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10001614 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61429
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (86.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025955Metagenome199Y
F048884Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000161459F025955GAGGMLFDKLWSQVKGAERSGKLTVEEALDCATRLPQALYCSMMECLAENGEDPQLIVAQVARLHDHMLKRLREVAATLQLRPPFGPH
Ga0212123_1000161460F048884GAGGMGIHVPKELHRRFRARLILEGRLMQDVIRSWVDEEVGSHRMRPPATGGLRFFKGVDRSTLAAIAVSLEQEKIRRLKSKLLIEGRNISQWGTERMEQFLKERG

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