Scaffold Ga0212123_10001581

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10001581
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62455
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (53.62%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007243	Metagenome / Metatranscriptome	355	Y
F022093	Metagenome / Metatranscriptome	216	Y
F027363	Metagenome / Metatranscriptome	195	Y
F033936	Metagenome / Metatranscriptome	176	Y
F034727	Metagenome / Metatranscriptome	174	Y
F043021	Metagenome / Metatranscriptome	157	Y
F079016	Metagenome / Metatranscriptome	116	Y
F087658	Metagenome / Metatranscriptome	110	Y
F095804	Metagenome / Metatranscriptome	105	Y
F103623	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000158115	F095804	N/A	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTVALQAQLQRFGDQVKGMNQPKTENNSPTPAPSVTGRS
Ga0212123_100015812	F043021	GGA	MRIGTIRAGKSWRQPGKLGLEPGRQIFCSSYRNECMQSLFLSQETPSGERILPATFNVVLIYEDFETRERGRKSLAYLGEEFGNDCEFRHSMWRLDILQDAKLNVLAAPSFAEADLLIVALRCERQVPDKILALIDERLAQTVNPECALVAPFERSAPVSRSSVYACLATLAQQHGFDFFEQAVTDAEDQAEPSLKLVWAF
Ga0212123_1000158121	F103623	AGG	MSTNESVYPRWEREDRVTRFFIGPSLPIYQVEEIKLIGGSMFLASASDKSNLVGQFESERNAKEACKRDFADKSIDPAAEIVGWGLNPRQKRR
Ga0212123_1000158131	F007243	N/A	MTSIHATVLSTERFRELYRVIVQLVPSEFVGPFERLRFKKNPYCGSFGTSVDKSWLTLDYRKDPGFKAGEAFPLRRTD
Ga0212123_1000158132	F087658	GAG	MPEALYFQITLEPHLKRSGLATGRKILFLAEVPVNLAKEASGAPEDDRMVFEAAERLAGNLTCMAMTGESSQPGEDEMRVSFRSTSGMSDDAKERHPDAEKDGVRIWLVGARPV
Ga0212123_1000158133	F079016	AGGA	MDSHEANGCAQELWGELIGIDDRTDQERTFTIYKRSGSLLVVSDTGCERLVGPDHGLSKTRIFQEVMYQFRVHAVRPKPSLYPLAD
Ga0212123_1000158135	F034727	AGG	MTTDEVLDALGRYKKDSNDSDRQTATKLGITNPILEDWLSGKTRPQKSTLARLAGFLRRVGYL
Ga0212123_1000158137	F022093	N/A	MIEIPDSVADELNARKVSLETRAYEVALETTSADRSNKPDYQMSLMSCTPGKVKNLDSLGEPSLLAPDACRAWVIKRPSPFQELLDKGWQSRQKNPGPKS
Ga0212123_1000158166	F027363	N/A	MTSGEWLFQLVESSGSSHIVVGHNMSTTGSLKTLVENWLTDVRRRGAELYGENQADEMLYLSFEGKDQLRFGVRIDFVAHEITVHINSPALSYTKREIFILNEESLRTVAKQMCPLPEGQAIISVYLLARLAILCHAYQRLLDEYDREHHIHTTTNTVQEIEAELRQCLTPEEQQRTENPFLRAKGK
Ga0212123_100015819	F033936	GGAGG	MLLENSGTIDAKEHDKIDSELCYSSSLEAAMNLILGHPAFVGEKATPSFKFITAARFLRENAPHAFQIGETDFPAQNSMDRWLWNLLDRNVDNTIH