Scaffold Ga0212123

Basic Information
Taxon OID	3300022557 Open in IMG/M
Scaffold ID	Ga0212123_10001545 Open in IMG/M
Source Dataset Name	Paint Pots_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022557 Open in IMG/M

Scaffold ID

Ga0212123_10001545 Open in IMG/M

Source Dataset Name

Paint Pots_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	63406
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (57.38%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

63406

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (57.38%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff, British Columbia

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011789	Metagenome / Metatranscriptome	287	Y
F024668	Metagenome / Metatranscriptome	205	Y
F033936	Metagenome / Metatranscriptome	176	Y
F039750	Metagenome / Metatranscriptome	163	Y
F095804	Metagenome / Metatranscriptome	105	Y
F097720	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000154518	F097720	N/A	MANFSDSHSWMFHGFPELDPDAILRQRRPGEKVLATEEERQRAWWLWRRRPREMNVFVYGSLLGIGAMAHTPFLILGSLQLFCVFHAGYILFVLWVVGMFFAKEARYRRWKKDYLRAIARLAR
Ga0212123_1000154539	F095804	N/A	MRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTKTEALETQLRQFGEQFKDSKLPQPENKSPTASPSATPQ
Ga0212123_1000154541	F033936	GGAG	MNIGVIGEIKRDQIDSGLSYSPRLEAAVNLILGDPAFVGDKGTPSFKFLRAARFLKNQAPHVFEIHEMGTVAKNGMDRWLWDVLD
Ga0212123_1000154544	F011789	N/A	MKTLNAKVLSILKSQSYRMRDKSNDQNKDILIKFWRMRVSYPGPKAVYEVELREPLRSFASKKYTVGLNGLVEFELFSDPQVAAGDTVQIDAYEPGEKILGGAAL
Ga0212123_1000154548	F039750	N/A	MSTESKEETVDNKNTENIEVRMVPEGTFAGTIEKPMPVKDGERVPDNTGDEGGGQN
Ga0212123_1000154553	F024668	AGAAG	MTAIGARVLAVDNLGAHYRVIVRIGFPRYRGSFHTLLFGENKPFMGFTHNGHLDLAYHEDPHLEAGQPFPLWTIQ
Ga0212123_1000154556	F095804	AGG	MKTLIIFFLGLIVGGVAMLFLPDTRRDEFNAEIRTQTVALQAQLQRFGDQLKGMNQPKTENSSPTPAPSVTGRS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212123_10001545

Overview

Ecosystem & Geography

Associated Families

Sequences