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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10001470 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 65280 |
| Total Scaffold Genes | 72 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (62.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004512 | Metagenome / Metatranscriptome | 435 | Y |
| F011789 | Metagenome / Metatranscriptome | 287 | Y |
| F066173 | Metagenome / Metatranscriptome | 127 | Y |
| F072646 | Metagenome / Metatranscriptome | 121 | Y |
| F103623 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_1000147016 | F103623 | AGG | MSTNESVYPRWEREDRVSRFFISPSLPIYQVEEIKLIGGSMFLASAADKSNLVGQFESEKNAKDACKRGFVDKNSDPAAENVGWGLNPRQKRR |
| Ga0212123_1000147017 | F066173 | AGAAG | VECRLLKPKDNVLLVLKFSAKQLDRVERQLDPAVAHFKHTRAGLGLAHLETEPVLFAFKTPVTEIQLSVTLNFNFRFVTAGSDEADYLLHDLNLRCEPLEIEYDDYMTYWQRLELENRLPSFEGFFKKAHYNSDLAFAGYQSSQDFLKDFEQQFVTSNAFKQIETLYNWVFKIMEETPDRKKSRRNPS |
| Ga0212123_1000147021 | F004512 | N/A | MTPIPAKVLTVAKQSSQYRVLVQIELEKYAGSFHTLVFGKRRPFTGTCYKGQLDLFYYRDPGLKVGQPFPLWTIK |
| Ga0212123_1000147024 | F072646 | GGAG | MIAKQRGEGAHLLDALWLRTLGDVTSLRRLRYQCRNIGQMIAEHEISEMIEYLEESKTKRKNGRSLGS |
| Ga0212123_1000147032 | F011789 | N/A | MKTLNAKVLSILRSQPHRTRDKSDDQNKDTLIKFWRMRVSYPEPEAVYEVELSEPLKSFASKKCTVGLNGLAEFELFSDPQVGAGDIVQIDAYAPGEKILGGSTL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |