Scaffold Ga0212123_10001371

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10001371
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68464
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (77.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000281	Metagenome / Metatranscriptome	1382	Y
F003216	Metagenome / Metatranscriptome	500	Y
F008277	Metagenome / Metatranscriptome	336	Y
F011162	Metagenome / Metatranscriptome	294	Y
F016029	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000137146	F011162	GAGG	MRIVSILSGLAVLFTTLAFAHLLHHYFLNAGEAAHSPPFLAGMGIGVVVGVFSFIGGCLLLRRGR
Ga0212123_1000137149	F003216	N/A	MTVKNAALLALIGTILMTALLVWNFVLTFLNVLRDLVPAVTMFSSFIYAFGCFSLAVFFYLFHRAQ
Ga0212123_1000137151	F016029	N/A	MKRVLILILTITTLAVARDKKSKAQPGPYIFTSKASAQTLKELIVQTNLREGYALDSANQFQFRFSKPAQMPVIGALFMASSACAGVSTKKVWSYTLTELNGITKVTVQPVWEYPDDYCKTQTQELIWSQRDEIAAFQAMLDKAR
Ga0212123_1000137159	F008277	GAGG	MKNDIEQSREPNPELVECAIVEVLEIAQRQGINPADFIQLLDSGIRVSDFLAALNQLAKAKNTIDCDS
Ga0212123_1000137171	F000281	N/A	MQNPVKERIVKLREEIAQISEANRLYLRSGKNKLDAAGDNARRLQRLQEILDELVALTDWKKL