Scaffold Ga0212123_10001328

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10001328
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69942
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (91.78%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001558	Metagenome / Metatranscriptome	671	Y
F001596	Metagenome / Metatranscriptome	666	Y
F001643	Metagenome / Metatranscriptome	659	Y
F003233	Metagenome / Metatranscriptome	499	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006399	Metagenome / Metatranscriptome	374	Y
F006672	Metagenome / Metatranscriptome	367	Y
F008980	Metagenome / Metatranscriptome	325	Y
F017708	Metagenome	239	Y
F017965	Metagenome / Metatranscriptome	237	Y
F080601	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000132811	F001558	GAGG	MLRVQTQELDGALICRLEGRFTGEGAEQVRTLVTRCDGKLELVVDLTDLMFIDAIGEEVLLFVKRLGAQFVAETSYSRDVCERLQLPFIGKRKSNMQVPGNSDGNGHRPRRR
Ga0212123_1000132812	F008980	GAGG	MMGAATRNLPEPPARDYIGRVFSQHREELEWLANFLTGDETIAAACLVDACALAESENPGFQEWVLKCACLATIRSAVQIQQRRIVQLSFAYKQRPCIHGGHTALSSDWREILVEESSVVIARLDVLCRSALVICGLEKRSADEAAVLLGIDPAGVEGAYCAAIKSLEVISCEQFQRQNDFAAVYN
Ga0212123_100013282	F006672	AGGAG	MQALDTLPGESNTSIISSIINWVCPQCGGRMSEFQREGRCRRNWLAEWEWANQTPRSLKSQRRHTGRSMR
Ga0212123_1000132840	F017708	AGGAG	MAKVIEFYIPKNFRKPLRAEAQPQLGKIIEFCPQTKRSA
Ga0212123_1000132845	F001596	AGGAG	MSWFHSSTAAVVARNYASSAEIVACFQDQRNVLGRLAFLITGDQATAEQAVVQACEMTLQGNSPFRDWLFEWAKAATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQSDVEERAASLDFILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVCRAAVLGANCHVLTWLHERHVKPVEENHDASPLCRNAGTGAE
Ga0212123_1000132848	F006399	GGA	MATPALNSRVQSLVTEYGVFWQFWPQFEQTDGERRLVGFEVELIGSHTSDLNHVDPACPTCRHVRSVLLAIVNLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVWVSIYVFLNRANGQSFETDLLNEVKTFLNRWGIHQR
Ga0212123_1000132849	F017965	AGGA	MSEEIEHRDALYLFACHLEWLTKRNLAAYQELLAALDDHDGDIRRLAESLLHRSSPRLERTATSIESW
Ga0212123_1000132851	F004823	AGGAG	MYATKAVNGVPAIQRDGQSVLRVCDQDWEFANWLCALLNELGHKSELLLNEQDWESLKAIDSPFRRTAQHA
Ga0212123_1000132853	F080601	GGAGG	MSMQRDPRSTKNSNPETVRTSARPSSHERLNSSVTALVIEQVLAEPGVHARLSDIVRGAQLFETAITQSRSRRKPEHLC
Ga0212123_100013286	F003233	N/A	MIRRVRYDVQLVRGAPMKLRTFLVAIAILGTVLHPAAAQAKKKTTQVDAPPLEPVLSGTSMQSNAVLSDVIARKPEMPLGPQDILKSYEIAMSLVVEKTSADFSVIVRTQQANQISGEQAEYLLLQSYQIAMMQYQVLSALHDVLKHDIDEAARRQARQSLKTTSSDTVLMVPFPGSVSAYR
Ga0212123_1000132862	F001643	GGAG	MLGELMNIPTDTLIDMLYMILAGDFAVTANDATEIEQIQRELQRRGGEQRWIFQAVN