Scaffold Ga0212123_10001306

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10001306
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70597
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (75.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035877	Metagenome	171	Y
F052098	Metagenome / Metatranscriptome	143	Y
F053182	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_100013065	F035877	AGGAG	MSEVLLSDSPNVHPVDPKERRDVRRALDHWLRQISAESPIPLLKVFDFSSIKDDWNCRFLICTDQHVENAAFVAYGTDFAKLLGLPERVAGITRLAEQIPERYRELFAEGCSKATAKRAPARFSGEFENDFTVELYRAVFLPIQLHPSWSKWLIFGSFNSCTTLSVDKKAQ
Ga0212123_1000130653	F053182	GGCGG	MRVFKVIAEPLDEDAPPAVAIVVAKDADEALILLRKDLNFSGYVLPPAEMIPMSIHAIEVRRLLGEDAAHEKGVYGFHLIGAEPPTSPSD
Ga0212123_1000130655	F052098	GGAG	MQLARLFSRKAPGVREDNAPGPFNWEELERLTTRLGMLHCRLETAQAVGHFGTVNTVRRDMKRVWTERERLLDRLLHQVVEHSLA