Scaffold Ga0212123_10001217

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10001217
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74347
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (80.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002075	Metagenome / Metatranscriptome	596	Y
F003634	Metagenome / Metatranscriptome	476	Y
F015370	Metagenome / Metatranscriptome	255	Y
F021581	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000121734	F002075	GAGG	MMNVAASQSNSEIWRELYVAALFETDREKMPSRIADAEQAIVARARELFSAGNDTIEEDQALDDALYALRALQSCLHIPSAAA
Ga0212123_1000121749	F015370	AGGAGG	MLKVTVANIGELAVLGCEGRIVERESADQLREGVTSQTDARIVVLELSEVSAIGGDGLGMLVFLQRWAREHNIRFLLFHPSKSVQNTLKRARSIAGFYITSPEEMKALLAYANSRFALAA
Ga0212123_1000121751	F003634	AGG	MPLLWWIALIISGLGIAAICLRAWESGGVRAKRAERTKRKEMRSLAERILSYGHTVHQRYPTGDVVVSELDLAEQLRKRPDAVATALNLLLSEQKVQRVTLIGYWKLNV
Ga0212123_1000121757	F021581	N/A	SFQKSRESMMPQYNPDILNDKDLNDLVAYLTSVGTK