Scaffold Ga0212123_10001081

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10001081
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79602
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (60.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001371	Metagenome / Metatranscriptome	712	Y
F012137	Metagenome / Metatranscriptome	283	Y
F039234	Metagenome / Metatranscriptome	164	Y
F062009	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000108116	F062009	GAG	MTRKQWSDELDKMEGLGAVIPDADRNAFLNYLTKNLGPEKGGAKDAAKPAAKKSSNAAD
Ga0212123_1000108119	F039234	N/A	MIALLDERFAMIYGAFKTLAGILSLGTIFSGAFSHAWCPVDVVIVSGRIEDAPRKGIIRVQLVYPKQKQKMGESGEVTVEGGSFRIQIPFLTQSRAPVLIGTLLEKCDRKPETVVVTLVEADQEGEREYDRVSLHLARNFKMADPSAYALRSAILLHGPPSVLPIR
Ga0212123_1000108153	F012137	N/A	MFKISTIDTRSQRTLVVEGTLIGSWVAELRTTWRTASQGLGGRKLVIDLGNLTVISLEGEDAILDLMKEGAKFSRGGILTRHVLKQLRRKKQQELPRR
Ga0212123_100010819	F001371	N/A	MPQRTEATITKTTEPYLEVGLICADRDGNRIRIDRVDRDAGTLSYHFLNDELRVQEGIQERSIEQFLAEGWYMAATGRSL